The main benefit of the front Dana 44 over a standard LP30 IMO, is that you can get 5.38 gearing (which is ideal if you have the 42RLE and 35s), and the factory air lockers (though aftermarket lockers are slightly better).
If you don't end up getting the Rubicon, I would swap in a HP30 when you inevitably regear/install lockers. Insanely cheap, bolts right in, gets the pinion and driveshaft up out of the rocks, and gear strength is increased.
The Rubi t-case on the other hand is an issue. If you think that you really can't live without it, just get a Rubi upfront. Aftermarket options suck, or it's an Atlas and that's $$$. It's the same with the LJs hardtop, if you think you would really need it, just get an LJ with one already on it.