I have no stake in this game, so the below is hopefully an unbiased comparison/viewpoint. I currently have a 4" lift short arm with no geometry corrections and it currently performs adequately for me as compared to my existing budget. If my performance needs and/or my budget changes in the future, then I will evaluate based on the below.
Raising a vehicle and keeping the same control arm mounting points, changes the geometry and thus changes the Instant Center (IC) and other geometry characteristics such as Roll Center, Roll Axis, etc.... The below will only discuss IC. IC is defined as the the point where the upper and lower links would intersect.
Going from stock lift height (where the upper and lower control arms (CA) are basically "flat") to 4" lift height without changing CA mounting locations changes the direction of the control arms from basically flat to now being angled up. This affects the IC and induces a high anti-squat/anti-dive.
Making any changes to the control arm attach locations will have an effect on IC. So if you keep the short arms and change the mounting locations using the Nth degree or JW method, there will be an effect (as compared to stock control arm mounting locations). Keeping the short arms and just changing the mounting locations in the vertical direction, even though it does have an effect, is limited to how much it can actually change since you are only working in one direction (vertical). Whether or not this change is beneficial or worth your effort/spend is up to you and should be dependent on how you utilize the vehicle and your time/budget. So as compared to a 4" lift with stock mounting locations, the answer to everyone's question is yes the JW brackets affects the geometry and is "most likely" an improvement over the 4" lift with stock mounting locations. "most likely" is subjective but change looking at geometry as related to IC, there would be an improvement as compared to 4" at stock locations.
Since the JW brackets only utilize the vertical plane for IC correction, you can improve the IC even more by not only utilizing the vertical plane but also the lateral (fwd/aft) plane. You can have a greater affect on the IC by not only altering the attach locations in the vertical location but also by extending the control arms and moving the frame side attachments forward. There are prepackaged kits to accomplish this geometry change in the vert/lateral plane or you can design and fabricate your own. Again, you have to evaluate your ability/effort required/time/spend to determine if the IC change is worth it to you. The savvy mid-arm is a prepackaged method for addressing the geometry by utilizing both the vertical and lateral planes, the prepacking has been done in such a way to gain the most improvement (as determined by testing and user feedback) within the "confines" of the existing structure. In addition to the IC correction, the prepackaged savvy midarm also triangulates the uppers which allows for the removal of the track bar (reducing number of attachments frees up the ability to move).
From my point of view (this is opinion) -
I am currently comfortable with the Short Arm (no geometry correction) and have somewhat pushed the limits but have learned the limits. So I am currently not wanting a "step" correction or a correction that will get me a "little" more improvement. When I go to invest the time/effort/spend, I am going to try and get as much improvement as possible. Thus, I am going to be looking at making changes that require use of all planes (vertical, lateral, possibly longitudinal). The major benefit of the Savvy MidArm is that it has been
proven to provide improvement while utilizing the existing confines (you will need a 1.25" BL and may need to some trimming on the TC skid). If you are willing to go outside the confines (major changes to body/frame/axle brackets/etc...) you may be able to get even more improvement or you may actually decrease the improvement if you do it incorrectly. Years of testing and tweaking is hard to come by in your own backyard with a single vehicle, so in addition to cost you also need to evaluate a prepackaged system with known results vs your own ability to change/test/tweak. Thus, my changes will probably mimic some of the Savvy MidArm in order to try and benefit from that proven experience while also incorporating the needed changes due to my current confines and budget.
Your current rig/experience/ability may differ and the "step" may be just what you are looking for, nothing wrong with that. or you may want to do numerous steps. Or you may say f' it, sell the TJ, and go buy a full blown Ultra4 car.
Flame away, I am bored today