During this dreaming phase I have mulled over many different ideas from the different forums and phone conversations ranging from Hemis which would interface easier with the existing dash electronics, a high horsepower SRT8 Hemi, 1000hp turbo LS, dash ideas, cheap junkyard LS engines, different transmissions, Hellephant engines, exhaust header configurations, various wiring concerns, diesels, turbos, etc etc etc.
Somebody even mentioned a '98 Honda Civic 4-banger!
To help unmuddle the mixture I got in touch with a guy who does engine swaps for a living and has worked with both the Hemi and LS, he's been kind enough to answer some questions for me and point me in the right direction.
The best advice I received is to do a proven engine swap that's been done before and not be the first to do something. Because reliability and actually getting my Jeep running sounds good to me, this seems to be advice that I'll be following throughout the entire swap even if it means missing out on something new and cool.
From the sounds of it, the LS engine is going to have the best bet of fitting into my build.
All of the Jeep interior stuff will function as long as they're powered up with 12v. The airbags, wipers, lights, turn signal, hvac blower, radio etc do not require the PCM.
If I want the factory gauge cluster to work with an LS then I will need to make a special harness that incorporates the GM side with the Jeep side PCM. However the easiest, most reliable and problem free solution will be aftermarket gauges that will interface directly with the GM ECU.
Even though I will be going with an LS I expect most of what I post about packaging the engine and trans will apply to any high uptravel builds where a high pinion axle housing travels up into the engine bay.