Today I started into the rest of the wiring for the amplifier. First, pull the bezel and yank out the stereo to get access to the wiring harness.
I spent a bunch of time trying to decide whether or not to run new wiring to the main speakers. Running new wires and leaving the factory harness intact would have allowed me to more easily go back to stock if I ever needed to do so.
Ultimately, I decided not to because it would have been a royal pain to do the rear. My cage is fully padded and covered, and to pull new wire back there would have meant pulling all the covers, padding, and about 6 miles of black tape - and then putting it all back.
@skrelnik's advice was that that stock wiring would work fine, so, I took the easy way out. Thanks dude.
I pulled out the FSM, identified the eight wires for the main speakers, and cut into the harness. I needed to extend those wires from behind the head unit over to the location of the amp. I solder spliced and heat shrank some 18 gauge speaker wire, which did the trick. After labeling those wires, I heat shrink'd the cut wires coming out of the connector.
That done, I added the RCA cables I needed for the pre-amp connection to the amp, and labeled those as well.
After routing all the new wires back to the amp location, I stuffed it all back in place.
Notice I have not yet put the bezel back in place - I'm not quite that confident in my wring abilities....