I have had a few private messages in the recent days so I thought to post this excerpt or recap of some notables regarding the V8 swap:
Some hints, kinks & insight:
Link to my build:
https://wranglertjforum.com/threads/project-red-headed-stepchild-a-restoration-build.6125/
I didn't put tons of detail on my build of the wiring but what I can tell you is you need the factory manuals for BOTH vehicles if you are to "blend" the harnesses together.
My opinion here:
It's not worth the huge money shops get to do this. Besides, their job will never look factory like you can make it look. Trust me, I've seen them all and they always add extra fuse blocks or relay panels etc. Things not needed and weren't factory style because they don't blend it with your factory tub wiring. They make it stand alone to run the engine in a kit or project vehicle, not like it came with the motor from factory unless they had your whole vehicle tub electrical to work on it at once.
Many believe it is easier to use the TJ harness and "add" the extra wires for the other injectors while changing all the sensor connectors to match the V8. That may be true in certain years or that came with a 4.0L, 42RLE & cruise control where the bulk of the transmission and injector wires are already there as needed. In my case with a very early 3/1996 build date TJ, it was easier to use the ZJ Grand engine compartment side harness. Also it was much easier for me to remove the engine compartment side harness connectors from the TJ harness and add them in where necessary. Reason being the wiring harness is already shaped to the V8 and it's transmission. I added the fuel sender unit wiring, the two accessory plugs that go to run the dash gauges, A/C, proper transmission 4x4 indicator lamp wiring and the cruise control to the V8 Grand Cherokee donor harness. It was way easier than adding a dozen pins to the ECM connectors otherwise and trying to re-shape the TJ harness. I started with a basic 4-cylinder automatic transmission recipient missing a great deal of the required wires from the start.
The ECM's groupded by bus type all have the same pinout for the type of bus, (1996-2000 CCD, 2001-2004 PCI then late PCI 2005-2006) for similar years of ECM bus used. Only difference is in the circuitry and programming that is INSIDE the ECM itself. You'll most likely want to reuse your Dodge ECM especially if it's from a basic truck that didn't come with a chip key or security enabled on it. The more basic without extras like remote door locks, the better because it is much less likely to need reprogramming or a companion BCM like ZJ Grands use. I used the ECM from a very basic 1998 V8 Ram truck automatic. You don't want to use a 1997 Ram ECM because 1996 & 1997 RAM trucks used a different type of dash instrument cluster, only 1998+ CCD ECM will run TJ instrument clusters in a 1996-2000 TJ Wranglers properly. There's more on this but that is why it is VERY important to select the correct donor & ECM for your swap. This is assuming your TJ is CCD bus but similar rules will apply to a PCI bus TJ built after 2000 year model.
Look carefully at the factory manuals I show pictured in my build, you'll need them. They contain ALL the needed connector pin assignments, wire color codes, ground locations and the schematic of the Automatic Transmission relay circuit that you will need to add to your Jeeps PDC under the hood. Take your time.....
Another note that you should be aware of:
Make sure your donor is THE SAME AGE OR NEWER than the recipient. Make sure you follow this chart from Hotwire auto on the generation of ECM and engine management bus or you will have to do extra wiring in the dash and replace gauges to work correctly. It won't be FEDERAL or STATE smog compliant if they test in your area OR if you ever move to an area they have testing in. If you move to a state that has strict emissions testing like California and you want to take your TJ with you, you'd better follow emissions laws. Typically if you follow California emissions laws, you will pass all the other states but I am not an expert on other states so you must do your homework and use "due diligence" when determination of what's needed there.
Link to Hotwire's list of MOPAR SWAP COMPATIBILITY GRID:
http://www.hotwireauto.com/?page=mopar-eng
Pay CLOSE attention to the years of CCD, PCI & CAN bus. Depending on the exact YEAR & MONTH of manufacture your Jeep may vary from the swap grid. The type of bus your Jeep has is key to alleviating LOTS of added headaches.
Ask me if you have more questions. I'll try to answer best I can.
It took me a month or two to build the harness working a couple of hours a night on weekends and odd times around my family schedule VERY part time. I could have done it in under a week if I worked at it 3 or 4 hours a night till it was done.
Motor mounts were Advanced Adapters placed where THEY recommend with the dowel pins. Donor in my case was a 1997-1998 Jeep Grand Cherokee ZJ because I wanted the starter on the passenger side and ONLY JEEP has it on the passenger side. All Dodge Truck & SUV applications will have the starter on the left side which means you WILL have to have at least 2-2.5" lift to clear the front drive shaft and exhaust system after the swap.
Also, ZJ Grand Cherokee exhaust manifolds fit PERFECT. Dodge Ram and Dakota/Durango may require a center dump header or trial & error. You may try to swap ZJ Grand 5.2/5.9 Exhaust manifolds on the Dodge sourced engine but it may interfere with the starters location on the drivers side of the Jeep.
It is a very wise idea to have the transmission completely rebuilt or re-manufactured prior to the swap. Having to pull a transmission because it is slipping or failed prematurely is a real PITA after the fact.
If your TJ was an automatic, find a late (2003-2006) automatic selector indicator to obtain the OVERDRIVE marking on your existing shifter which will work with this swap just fine. Yes I went with the 5.9L Limited ZJ Grand Cherokee 46RE transmission as the 46RE is a much heavier duty automatic over the 44RE found in regular ZJ's. All Dodge sourced engines should have the 46RE and the only difference is the starter is on the driver side with these. It is a good transmission provided you protect it from the rocks and keep the bands properly adjusted. Make sure the breather tube is routed well up and out of the way because ANY water in your automatic will destroy it almost immediately.
If your fuel sender is working fine now, it will work with the swapped Magnum V8 engine as well. The only time it won't is if you are making really big HP numbers with all kinds of aftermarket goodies or you've swapped in the V10 which would be crazy!
I reused the starter wiring and the alternator wiring from the Jeep but used the much LARGER ZJ alternator with higher amp output.
At the same time I swapped an Atlas II transfer case to the 46RE transmission and added aftermarket Rock Jock axles to the project. I also swapped in the GenRight EXT desert crawler extended range tank so I would not have to carry jerry cans on the back and alter my center of gravity.
There is a photo of the all aluminum radiator I am running and pictures of the AGR steering box with high-output pump on my build. I highly recommend you run a ZJ Grand Cherokee 5.2L fan and factory 4.0L Jeep shroud for cooling. It will fit like it was factory if you care about those kinds of things. I like all my engine swaps to look like it was off the assembly line. This is much more reliable than any electric fan solution if you do any serious back-country exploring or creepy-crawly over slow stuff. Also I used an external "plate" style transmission cooler along with another for a power steering cooler in front of the A/C condenser.
Under this topic, many people take this time to swap out the power steering on Dodge sourced engines to ZJ Grand Jeep style which is almost the exact same as your TJ has now. This means the power steering hoses fit perfectly and the pump is tucked closer to the engine than a Dodge sourced power steering pump and accessory bracket. Many times there is inner fender interference since the Dodge sourced power steering sticks way out on the drivers front side. Not everyone has trouble with this but many do so keep it in mind while doing your swap.
There are a couple of large threads, one started in 2012 by JeepinGIJOE on doing V8 Magnum swaps on the J ee pfo rum dot com forum that is 167 pages long as of now, with lots of details and will take you a week or more to go through. You'll have to dig around to find it but you should definitely check there for specific details on additional things. Lots of guys still regularly monitor it and posts have been made recently this summer so it's not a dead thread. There are others too but that one has current activity usually every few months.
Link to a long post:
https://www.je ep forum(dot)com/forum/f9/wrangler-magnum-v8-discussion-1365878/
You'll have to correct the URL yourselves. Hope this isn't a huge violation of policy to offsite link but in the case of information needed for such a big job, every bit counts. I will be updating this thread or make a "How-To" on engine harness and swaps for TJ when I have the time.
I used the Jeep ZJ Grand Cherokee throttle cable and it worked perfectly. Since I went to the Atlas II, I didn't really care about the factory TJ transfer case linkage as I have twin sticks for front & rear axle control.