That's where the programmer comes in. The MOPAR engineers, bless their hearts, opened up the computer on the JK/U's, so you can go in and do a bunch of changes. Some good, some bad. It's actually nice in a way because with a higher end programmer you can adjust shift points, set the speedo for tire size, adjust shift points, turn the various nanny controls on or off, tune the engine for torque and horsepower...you can even tune for what type of gas you are going to burn. There's a lot there to work with. It's not like a TJ though, if one of those systems develops a glitch, you have an expensive, time consuming issue on your hands.
The traction control and stability system will absolutely heat your brakes up if you get into it for awhile off road. It's doing Jerry's trick of applying the brakes to control wheel spin, with the addition of trying to keep the direction that the front wheels are pointed correlated with the direction the JK is headed. I guess you can make it spaz out going side hill as well, though I haven't gotten there yet.
That shit is too confusing.