Start the engine, then let the vehicle get up to operating temperature.
Next, shift through all the gears and finally put it in neutral with the engine still running. Now go check it!
You'll get a more accurate level check when it's in neutral since the transmission pump is working in neutral. The pump doesn't go on when it's in park.
I've heard of people with the 42RLE overfilling by as much as a quart without any issues. So I wouldn't feel uncomfortable slightly overfilling it, just don't go crazy.
IMPORTANT: Be sure to put the parking brake on (and be on a flat surface) when you're checking it in neutral. Either that, or have someone in the Jeep with their foot on the brake.
Oh, and here's all of the factory manuals, right here on this forum (thanks
@JeepNWilly):
Jeep Wrangler TJ Factory Service Manuals (FSM) & Technical Documentation