I have a 2005 LJ and just installed 33" tires (285-70-17) and Currie (RockJock) springs, track bars (front and rear), bump stop kits (front and rear), new rear drive shaft, Swayloc, and new shocks. I had already installed Currie short arms all around about 9 months ago. Just took my first drive this morning. I spent a lot of time cycling the suspension, making adjustments, and learning how the suspension works. Quite a process to get maximum use out of the shocks and suspension. My build goal is a very capable trail runner, not a pure rock crawler.
My advice is to go for a 4" lift IF you DON'T have a 1" (or 1.25") body lift, and a 3" if you do have a body lift. My goal was to keep the height of the lift minimized and still utilize the shocks and associated travel to the max. I did the body lift about 6 months ago, so a 3" lift worked great and I am glad I didn't go for a 4". At full articulation the front tire stuffs up into the fender but doesn't rub anything, and the rear stuffs up with an ever so slight rub on the upper-rear of the fender (I could do one more adjustment and eliminate this, and I may over time). Shocks can be adjusted to come close to balancing up and down travel. So basically as good as I can get and I am really happy at this point - we will see what I think after a few trips. Undoubtably a few more experienced folks will chime in here and provide some better in-depth information.
A caution of you go for the 3" springs from Currie: their website lists both lift height, 3" for example, and "Spring Loaded Height". And if you use the much-reported stock spring loaded lengths (12" front, 8" rear) you will see that both the lift height and the Loaded Height cannot be correct. For instance, a 9131RH1 lists a 3" lift on an LJ, which would give a total loaded spring height of 8+3=11", but the listed Loaded Height is 12.25". I found, in all cases, the Loaded Height to be the correct value. When I first ordered springs, about a month ago, I ended up with a 2.5" lift on the front, and a 4" lift on the rear, and it looked really stupid bad with the rear way up in the air. I ended up having to order different rear springs. Currie is aware of this issue and is in the process of fixing it on their web site, so they may have it corrected online by the time you order, but I would give them a call when ordering and don't just pick springs that say "3" lift for an LJ" online and hit the order button. The have agreed to take the mis-ordered springs back, which is just good customer service. Everything else I ordered from them has just been freaking awesome - great products.