In 1998-98.5, Dodge eliminated the VSS from the t-case and used the output shaft speed sensor from the transmission for ECM input, speedo and cruise functionality. This is all communicated to the dash via the CCD twisted pairs.
This means if you used the 98+ harness, you wouldn't have a VSS plug to connect. I'm not sure what you're plugging it into...
Note that 1998 was the transition year and I just recently helped a person with a 1998 Ram harness/ECM that had a mix of changes that we had to make work with his 97 ECM (his was going into a YJ, so he needed a pre-CCD harness and ECM). This is why I asked how the harness was integrated with the Jeep harness. It isn't uncommon for people to utilize the TJ harness and then extend and add the necessary #7 and #8 injector wires. Doing so works, in theory, but doesn't take into account the ECM pinout differences (among some other items).