That Fluke is a nice little meter, I have the same one. Sorry it took me so long to get back, the wife had arm surgery and I've been playing Mr. Mom / teacher with my kids all week.
The basic idea of narrowing down this problem is looking through the wiring diagrams to see what all is common between all the circuits. For the Dome light, courtesy light, & radio, they all start in the PDC at the same fuse & have connector C108 in common. For the gauges, they start at the PCM & also go through connector C108 and into the instrument cluster (which is why I suggested finding that C108 connector).
All of your wiring diagrams start with power at the top & ground at the bottom, like a 'start to finish' concept. For example look at the radio diagram here and you'll see that it starts at the battery, goes to the PDC through fuse 17. The wiring diagram calls the two pins on the fuse A14 & A13. Then it leaves the PDC at connector C100, goes to connector C108 (where it also splits off to your underhood lamp & dome lamp) through connector C203, splice S204, and into the back of the radio at connector C220 pin 7.
For the purpose of using that Fluke, the idea is to check wiring by measuring for resistance in ohms. You'll set your dial to the ohms symbol (about 12:30 on your Fluke), place the leads on either end of the wire in question, and see what you have for a reading. Typical automotive circuits should give you something in the low single digits, like 1-4 ohms. If you get a reading of "OL" (out of limits), that means the resistance is so high that the meter can't measure it and this is indicative of an open wire.
So using that on the first diagram here for your radio, you would set your meter to read ohms, place one lead on pin A13 in your PDC, your other lead on pin 7 in the connector on the back of your radio. If your reading is open (or OL) then the next step is to segment the circuit and see where the problem is. Since C108 is in the middle, you could disconnect that and check from the PDC to C108, and then C108 to your radio. If you get a good reading going one direction and a bad reading going the other, you know which end the problem is on.
All that being said, the fact that your problems began after water got on the engine makes me think your problem is going to be in the engine compartment. I saw above that you found that cluster up under the dash where C108 sits, that connector is in common with everything else but it looks well out of the way of being able to get wet. Have you unplugged it yet and looked up in there?