The vibrations are from each u-joint at the front and rear of the rear driveshaft operating into an excessive angle... a bigger angle than the u-joints were designed for to work into.Thanks Jerry. It’s a 98 TJ. Before going the SYE and CV driveshaft route, would the washer shims on t case likely improve the issue? If it is the pinion angle? Again, the fact that all issues went away with rear shaft disconnected leads me to think it’s the angle.
You could temporarily try dropping the tcase skidplate another inch down to 2". Or install either a set of 1" motor mount spacers or a set of 1" taller rubber motor mount lifts.
You can't just live with this particular vibration as it will eventually start taking things out. U-joints, bearings, or seals. You have to do something soon.
I'd either bite the bullet and install a SYE & CV driveshaft or drop down to a 3" suspension lift.