Replacing the ignition coil is not a typical or normal part of doing a tuneup. The only time I'd replace the ignition coil is if I knew it was having problems. For your '99 I'd confine the tuneup to a new distributor cap, rotor, and new plugs like Autolite's XP-985 (good for 200k+ miles) or the 100k mile Autolite AP-985 or Champion 3034. For the distributor cap and rotor, they come with either aluminum or brass contacts and brass is by far the longer-lasting better version.
If you can find them I'd install new Mopar ignition wiring too. Mopar's quality is unsurpassed, most ignition wiring sold in auto parts stores is low quality. Just make sure to avoid so-called "low resistance" performance ignition wiring. Low-resistance wiring sounds good but it's not, extra resistance is actually added to good quality ignition wiring to suppress ignition noise/static that can cause problems for your computer and AM or CB radios. The additional resistance does not significantly reduce the ignition voltage due to the extremely low amount of current passing through the ignition wires.