I know Novak has a lot of experience and expertise in this area, but based on how flat out wrong their website has been, and continues to be, on this specific subject renders them a non-authority here.
The end of the output shaft in relation to the end of the housing has squat to do with what input shaft you need in the case. What matters is how much output shaft protrudes from the output seal of the transmission, whether the seal rides on the output shaft like it does in the nsg370 or on the input like it does in the Ax15, and the length of spline machined onto the end. The transfer case needs to meet the tail housing BEFORE the splines bottom out, and the input gear needs to either extend into the trans output seal, or stop before it makes contact, depending on the seal arrangement.