Good choice. Personal opinion but I like 3.73 for 31" tyers.
Believe it or not the "stock box" is the way to go as most of the intake upgrades will do little to add to performance unless your planning to revving in the very high range like above 4000 rpm
And, you do not need to install a lift to clear 31 inch tyres unless you're planning to use a disconnect sway bar, however, you may need to space the steering stoppers with a washer or too to stop contact with the lower control arms.
The secondary prefilter was for heavy particles filtering (like a snorkel), not for performance. But we figured we'd have to reinstall the stock airbox anyways for all the Swiss DMV inspection ... it was more trouble than worth, especially since we have onboard air to blow the filter off every night.
And yes, we will use quick disconnects but going to a slightly different offset to prevent rubbing.
It was the logical time to regear. We needed to open and adjust everything anyways for the air lockers install.
3.73 will give us good torque and the option to go bigger in the future if we ever wish.