With the motor set in place, the Holley instructions call you to loosen the mounts and use a jack and prybar as needed to get the mounts to sit square and flush on the frame. This process is also used to center the drivetrain. With the transmission bolted in, I was able to use the spacing from the cylinder heads to the firewall as well as how square the transmission mount say in the crossmember to make sure the engine was centered.
The driver-side mount was near perfect and was nice and flush. The passenger mount caused me some grief. Nothing I tried would allow the 4 frame contact points to touch the frame. I moved, checked for interferences, adjusted and pried for quite some time. You can see in the image below just how much it was shifting with the engine in place by the bolt-head markings in the primer coat. Ultimately, I found where the mount was most happy, kept the engine/drivetrain centered and had 3 solid contact points (I would simply buildup and close the gap on the one that was slightly off, ~1/16"). I put few tack welds in place - which was quite the challenge while trying to hold a prybar and a 500-lb engine in temporary position!
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With the mounts tacked in place, I double checked fit and alignment, then began removing the trans and engine from the chassis; luckily I had my YJ buddy on hand to help out. Once the engine was out, I burned all the mounts in and then put on a coat of self-etching primer, followed by some VHT Epoxy spray paint. The mounts have lots of weldable surface area and are quite strong.
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Since I'm going to be removing the tub for paint, I decided to scrap the idea of painting the firewall ahead of time. This allowed us to bolt the engine and trans back in place, which not only helps keep my garage clean but also will let me do some other prep work while it's in (like layout the harness and check for fitment/routing).
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Before putting the motor back in, I made sure to take care of the little post hole on the valve cover that was too close to the firewall. A small coping saw with thin kerf blade made for quick and easy work.
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With the motor in place, I placed the intake and cover on top, then put the PSC reservoir back in place as well to check clearance - I swear it's like this swap was meant to be! The cover is a tad bulky and the truck intake points the TB directly at the hood. I will need to play around some and see if I have the room here but I may not be able to run the cowl intake after all. I won't be able to check until I get the body work done and everything bolted back together but I will have to keep this in mind as the swap progresses...
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