What are the compressed and extended lengths of the shocks? How was their size determined?
Step one is to put the ride height where it needs to be with the appropriate springs. Also, adjust the pinion angle for the new ride height, as that will effect the position of the lower shock mounts.
Then the axle needs to be fully cycled through it's full movements in order to determine what the minimum and maximum measurements between shock mounts are. With the tires on and the springs/jounces removed, raise the axle to find the first point of interference and measure the space between shock mounts. Then, hang the axle with the springs loosely in place, measure between shock mounts again.
From there we can determine the appropriate shock length. The overall shock travel should be roughly split in half. I prefer to favor more up travel than down travel, if possible. Finally, the bump stops most likely need to be extended to protect the compressed shocks.
If the rear end is any indication of how things are set up, I would be looking at the front as well to see if everything is playing well together.
After all that setup, and only after, should you start messing with the shock valving.