I have a pretty decent sound system in my TJ with not really a lot of money invested.. I have two polk audios in the dash, two midrange speakers in the soundbar and 2 6x9 in boxes in the rear part of the jeep... all the speakers are powered by a soundstream PN4.1000D that I stuck under my rear seat, if you add some new speakers but you are keeping the headunit as powersource you wont listen to any improvement that's for sure...
I know that some people will say that "its a jeep, you wont hear high fidelity stuff" but believe me when I say that you wont need a lot of money to have a decent sound in your rig...
If space is something critical to you, I would suggest you the soundstream stealth series, the 4 channel amp is of the size of a smartphone and will power your speakers with 90 watts RMS and you can fit it behind the dash...
last but not least.... I know you already invested in the speakers.... but if I may suggest..... I would get a bracket for use your 5.25" in the dash, add some 6.5" in the sound bar and just sell your 4x6s... you wont get too much from those 4x6s....
the links for all the stuff I mention to you are here...
soundstream 4 channel small and compact:
https://www.amazon.com/dp/B01N9VGQRA/?tag=wranglerorg-20
bracket for the 5.25" speakers in the dash:
https://www.amazon.com/dp/B009DHE462/?tag=wranglerorg-20
soundstream PN4.1000D amp that may fit under your rear seat (I have that one):
https://www.amazon.com/dp/B00VH40878/?tag=wranglerorg-20
Polk Audio 6.5 speakers: (on ebay they will be cheaper)
https://www.amazon.com/dp/B01EXOTD56/?tag=wranglerorg-20
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