Notice both of your transmissions were manuals which would use the same length input shaft in the transfer case. The length difference matters a lot when the transfer case was made for an automatic but the transmission is a manual or visa versa. Tcase input shafts made for manual transmissions are, generally speaking, too short to seal an automatic transmission's output shaft.
I did a transmission conversion from a manual to an automatic. I learned about the difference in 231 input shaft length differences for auto vs. manual transmissions when my new 32RH automatic leaked ATF like a sieve out its output shaft because my manual-style 231 tcase input shaft wasn't long enough to seal it. I ended up having to install an extended output shaft into the 32RH so it would seal.
According to Novak. The NV3550 used a long input shaft and the AX15 used a short. I started out with the 3550 and went to the AX15. Again. No issues.