It may be nothing, but when I was shopping, I was skeptical of every Jeep that had no carpet. I felt that this was likely a sign of a leak somewhere, or that it just hadn't been taken care of so it looked better with no carpet versus ruined carpet.
Now I ended up getting one that had been completely gutted and redone, so it's hard to say. But that was just my view.
I'll agree with others on the 44 rear, I considered it a must. The full doors and soft top is nice. Also, don't forget that something that needs shocks, tires, or minor work might allow you to get in at a much lower price with the opportunity to upgrade to things that you prefer.