TJ vs XJ Transfercase Clocking

XCRN

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Is the difference in clocking between and XJ and a TJ transfer case done at the transfer case or the transmission? I am looking for a rebuildable core to adapt to a 6L80 with a SYE and XJ transfer cases are much cheaper. I am guessing that going SYE and 6L80 adapter that replaces the Jeep input shaft makes it irrelevant where the transfer case comes from as far as internals and matching input/output shafts.
 
It is at the transmission. The difference is approx 10 degrees.
I believe all 231J transfer cases have the studs in the same location. The Ax15 in a wrangler had the t case holes clocked up versus the other Jeep and Dakota AX15s.
 
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